بیناجنس را می‌توان با ''[[تراجنسیتی]]'' نیز مقایسه کرد،<ref name="coeres19522">{{Cite web|url=http://www.assembly.coe.int/nw/xml/XRef/Xref-XML2HTML-en.asp?fileid=20057&lang=en|title=Children's right to physical integrity, Report Doc. 13297|website=[[Council of Europe]] Parliamentary Assembly|date=6 September 2013|archiveurl=https://web.archive.org/web/20131226081751/http://assembly.coe.int/nw/xml/XRef/Xref-XML2HTML-en.asp?fileid=20057&lang=en|archivedate=26 December 2013}}</ref> یعنی شرایطی که در آن [[هویت جنسیتی|هویت جنسیتی فرد]] با [[جنسیت]] اختصاص داده شده او مطابقت نداشته باشد.<ref name="coeres19522"/><ref>{{Cite web|url=http://interactyouth.org/post/100048044990/laverne-cox-is-on-this-weeks-faking-it-in-honor|title=Trans? Intersex? Explained!|publisher=[[Advocates for Informed Choice#Inter.2FAct|Inter/Act]]|accessdate=2013-07-10|archiveurl=https://web.archive.org/web/20141018091459/http://interactyouth.org/post/100048044990/laverne-cox-is-on-this-weeks-faking-it-in-honor|archivedate=2014-10-18}}</ref><ref>{{Cite web|url=https://oii.org.au/18194/differences-intersex-trans/|title=Basic differences between intersex and trans|publisher=[[Organisation Intersex International Australia]]|accessdate=2013-07-10|archiveurl=https://web.archive.org/web/20140904081530/http://oii.org.au/18194/differences-intersex-trans/|archivedate=2014-09-04|date=2011-06-03}}</ref>برخی از افراد هم بیناجنسیتی و هم تراجنسیتی هستند.<ref>{{Citation|publisher=Intersex Day|last=Cabral Grinspan|first=Mauro|authorlink1=Mauro Cabral|title=The marks on our bodies|date=October 25, 2015|url=http://intersexday.org/en/mauro-cabral-marks-bodies/|archiveurl=https://web.archive.org/web/20160405220557/http://intersexday.org/en/mauro-cabral-marks-bodies/|archivedate=April 5, 2016}}</ref> یک مقاله مروری بالینی در سال ۲۰۱۲ نشان داد که بین ۸٫۵ تا ۲۰ درصد از افراد بیناجنس، [[آشفتگی جنسیتی]] را تجربه کرده‌اند.<ref name="furtado3">{{Cite journal|last=Furtado P. S.|displayauthors=etal|year=2012|title=Gender dysphoria associated with disorders of sex development|journal=Nat. Rev. Urol.|volume=9|issue=11|pages=620–627|doi=10.1038/nrurol.2012.182|pmid=23045263}}</ref>
